Distribution of taxa — taxa_distribution • microbiomeutilities

Plots distribution of taxa.

taxa_distribution(
  x,
  color.level = "Phylum",
  color.taxa = brewer.pal(12, "Paired")
)

Arguments

x: phyloseq-class object
color.level: Taxonomic level to color
color.taxa: vector of colors specified by user Default is brewer.pal(12,"Paired")

Value

ggplot2 object

Examples

library(microbiomeutilities)
data("zackular2014")
pseq <- zackular2014
p <- taxa_distribution(pseq)
p
#> Warning: Groups with fewer than two data points have been dropped.
#> Warning: Removed 1 row(s) containing missing values (geom_path).