Prints an overview phyloseq-class.
print_ps(x)phyloseq-class object
Prints information about the phyloseq-class object.
library(microbiomeutilities)
data("zackular2014")
pseq <- zackular2014
print_ps(pseq)
#> 01] ntaxa = 2078
#> 02] nsamples = 88
#> 03] nsamplesvariables = 7
#> 04] nranks = 7
#> 05] Min. number of reads = 15704
#> 06] Max. number of reads = 216888
#> 07] Total number of reads = 4594626
#> 08] Average number of reads = 52211.66
#> 09] Median number of reads = 49415.5
#> 10] Sparsity = 0.728426590252865
#> 11] Number of singletons = 0
#> 12] % of taxa that are singletons
#> (i.e. exactly one read detected across all samples) = 0