Plot ZymoBiomics to Experimental comparison

plotZymoDefault(x)

Arguments

x: Output from checkZymoBiomics

Value

ggplot object

Details

A wrapper to plot the output of checkZymoBiomics.

Author

Sudarshan Shetty sudarshanshetty9@gmail.com

Examples

library(phyloseq)
output.dat <- checkZymoBiomics(ZymoExamplePseq,
                               mock_db = ZymoTrainingSet,
                               multithread= 2,
                               threshold = 80,
                               strand = "top",
                               verbose = FALSE)
#> Using internal reference database
#>             for ZymoBiomics
#> Warning: Expected 8 pieces. Missing pieces filled with `NA` in 937 rows [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, ...].
plotZymoDefault(output.dat)