Below are resources useful for microbiome sequencing specifically 16S rRNA gene-based studies.
NOTE:
1. The resources mentioned here are in no way comprehensive and if you know any articles/resources highlight it on the GitHub repo.
2. Some may be outdated but these can be re-purposed with some effort if you really need to do some specific analysis.

Did you recently publish an article with reproducible code rendered as a website? Then contact us and we can highlight it on this website!

  1. Lahti L, Shetty SA, Ernst F (2021) Orchestrating Microbiome Analysis

  2. Shetty SA, Lahti L, Hermes Gerben DA, & Smidt H. (2018, September 27). Microbial bioinformatics introductory course material. Zenodo. http://doi.org/10.5281/zenodo.1436630.

  3. Nabiilah Ardini Fauziyyah Microbiome Analysis using microbiome in R

  4. Schmidt, Ruth. How to give life to your microbiome data

  5. Schloss Pat. Riffomonas Project YouTube Channel

  6. Bisanz, Jordan E. Analyzing and Visualizing Microbiome Data in R

  7. Luna, Pamela N. Microbiome Joint Model Tutorial

  8. Svetlana UP. A-microbiologist-wants-to-compute

  9. Svetlana UP. Microbiome-etc-Podcasts

  10. Svetlana UP. Microbiome-conferences-etc

  11. Hannah Freund. Amplicon Analysis Workflow

  12. Tully, B. J. et al. The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment. Frontiers in Education (2021).