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WirbelJ , et al. (2018) data in which the authors investigated CRC microbiome in comparison to healthy controls.

Usage

data(WirbelJ_2018)

Format

Phyloseq object

Value

Loads the data set in R.

Details

WirbelJ_2018 was obtained from curatedMetagenomicData consists of 530 taxa (species-level) in 125 samples. These include 60 CRC and 65 healthy samples. The data are relative abundances.

References

  • Wirbel, Jakob, et al. (2018) Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer. Nature medicine, 25(4), pp.679-689. https://doi.org/10.1038/s41591-019-0406-6

Author

Sudarshan Shetty sudarshanshetty9@gmail.com